Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2760515..2760667 | Replicon | chromosome |
| Accession | NZ_CP055883 | ||
| Organism | Enterobacter sp. RHBSTW-00975 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2760529..2760632 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2760515..2760667 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV340_RS13195 | 2756789..2758231 | + | 1443 | WP_181216026.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV340_RS13200 | 2758337..2758576 | + | 240 | WP_020883412.1 | YebV family protein | - |
| HV340_RS13205 | 2758611..2759255 | - | 645 | WP_181216027.1 | protein-serine/threonine phosphatase | - |
| HV340_RS13210 | 2759423..2760364 | + | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| - | 2760515..2760667 | + | 153 | - | - | Antitoxin |
| - | 2760529..2760632 | - | 104 | - | - | Toxin |
| HV340_RS13215 | 2760771..2761109 | - | 339 | WP_059306268.1 | YebY family protein | - |
| HV340_RS13220 | 2761126..2761995 | - | 870 | WP_059306267.1 | copper homeostasis membrane protein CopD | - |
| HV340_RS13225 | 2761997..2762368 | - | 372 | WP_059306266.1 | CopC domain-containing protein YobA | - |
| HV340_RS13230 | 2762506..2762736 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| HV340_RS13235 | 2762846..2763496 | + | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| HV340_RS13240 | 2763521..2764183 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162486 NZ_CP055883:c2760632-2760529 [Enterobacter sp. RHBSTW-00975]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT162486 NZ_CP055883:2760515-2760667 [Enterobacter sp. RHBSTW-00975]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
