Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1991375..1991643 | Replicon | chromosome |
| Accession | NZ_CP055675 | ||
| Organism | Escherichia fergusonii strain RHB28-C13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1991502..1991605 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1991375..1991643 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY52_RS09470 | 1987925..1988587 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVY52_RS09475 | 1988611..1989267 | - | 657 | WP_046081494.1 | carbon-nitrogen hydrolase family protein | - |
| HVY52_RS09480 | 1989374..1989604 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVY52_RS09485 | 1989743..1990117 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVY52_RS09490 | 1990120..1990992 | + | 873 | WP_181203379.1 | copper homeostasis membrane protein CopD | - |
| HVY52_RS09495 | 1991004..1991345 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1991375..1991643 | - | 269 | - | - | Antitoxin |
| - | 1991502..1991605 | + | 104 | - | - | Toxin |
| HVY52_RS09500 | 1991739..1992395 | + | 657 | WP_181203380.1 | protein-serine/threonine phosphatase | - |
| HVY52_RS09505 | 1992396..1992587 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVY52_RS09510 | 1992692..1992928 | - | 237 | WP_181203381.1 | DUF1480 family protein | - |
| HVY52_RS09515 | 1993046..1994485 | - | 1440 | WP_181203382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162459 NZ_CP055675:1991502-1991605 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT162459 NZ_CP055675:c1991643-1991375 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
