Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 224604..224871 | Replicon | chromosome |
| Accession | NZ_CP055599 | ||
| Organism | Escherichia fergusonii strain RHB41-C23 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 224730..224833 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 224604..224871 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV014_RS01070 | 221154..221816 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HV014_RS01075 | 221840..222496 | - | 657 | WP_181198935.1 | carbon-nitrogen hydrolase family protein | - |
| HV014_RS01080 | 222603..222833 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HV014_RS01085 | 222972..223346 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HV014_RS01090 | 223349..224221 | + | 873 | WP_181198936.1 | copper homeostasis membrane protein CopD | - |
| HV014_RS01095 | 224233..224574 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 224604..224871 | - | 268 | - | - | Antitoxin |
| - | 224730..224833 | + | 104 | - | - | Toxin |
| HV014_RS01100 | 224967..225623 | + | 657 | WP_181198937.1 | protein-serine/threonine phosphatase | - |
| HV014_RS01105 | 225624..225815 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HV014_RS01110 | 225919..226155 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HV014_RS01115 | 226274..227713 | - | 1440 | WP_181198938.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162414 NZ_CP055599:224730-224833 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT162414 NZ_CP055599:c224871-224604 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
