Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1934186..1934330 | Replicon | chromosome |
| Accession | NZ_CP055509 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00472 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1934222..1934324 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1934186..1934330 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV207_RS09475 | 1929316..1931376 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HV207_RS09480 | 1931380..1932039 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| HV207_RS09485 | 1932118..1932348 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV207_RS09490 | 1932461..1932835 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HV207_RS09495 | 1932839..1933708 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HV207_RS09500 | 1933725..1934063 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1934186..1934330 | - | 145 | - | - | Antitoxin |
| - | 1934222..1934324 | + | 103 | - | - | Toxin |
| HV207_RS09505 | 1934457..1934816 | - | 360 | WP_077253379.1 | tyrosine-type recombinase/integrase | - |
| HV207_RS09510 | 1934815..1935294 | + | 480 | WP_064147222.1 | lysis protein | - |
| HV207_RS09515 | 1936083..1936274 | + | 192 | WP_064147221.1 | hypothetical protein | - |
| HV207_RS09520 | 1936225..1937589 | + | 1365 | WP_181247924.1 | hypothetical protein | - |
| HV207_RS09525 | 1937839..1938267 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HV207_RS09530 | 1938277..1938558 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T162394 NZ_CP055509:1934222-1934324 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT162394 NZ_CP055509:c1934330-1934186 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
