Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2979347..2979490 | Replicon | chromosome |
| Accession | NZ_CP055418 | ||
| Organism | Citrobacter sp. RHBSTW-00944 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2979352..2979455 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2979347..2979490 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV334_RS14340 | 2974917..2976398 | + | 1482 | WP_181221902.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV334_RS14345 | 2976499..2976735 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV334_RS14350 | 2976838..2977029 | + | 192 | WP_016152779.1 | YebW family protein | - |
| HV334_RS14355 | 2977030..2977671 | - | 642 | WP_016156284.1 | protein-serine/threonine phosphatase | - |
| HV334_RS14360 | 2977749..2979029 | - | 1281 | WP_181220538.1 | hypothetical protein | - |
| - | 2979347..2979490 | + | 144 | - | - | Antitoxin |
| - | 2979352..2979455 | - | 104 | - | - | Toxin |
| HV334_RS14365 | 2979611..2979949 | - | 339 | WP_003833793.1 | YebY family protein | - |
| HV334_RS14370 | 2979970..2980842 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| HV334_RS14375 | 2980846..2981220 | - | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
| HV334_RS14380 | 2981364..2981594 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV334_RS14385 | 2981701..2982357 | + | 657 | WP_047415371.1 | carbon-nitrogen hydrolase family protein | - |
| HV334_RS14390 | 2982381..2983043 | + | 663 | WP_181220539.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162352 NZ_CP055418:c2979455-2979352 [Citrobacter sp. RHBSTW-00944]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT162352 NZ_CP055418:2979347-2979490 [Citrobacter sp. RHBSTW-00944]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
