Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2229946..2230114 | Replicon | chromosome |
| Accession | NZ_CP055325 | ||
| Organism | Klebsiella michiganensis strain RHBSTW-00409 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2230004..2230107 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2229946..2230114 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV187_RS10765 | 2225073..2227133 | + | 2061 | WP_009652043.1 | oligopeptidase B | - |
| HV187_RS10770 | 2227140..2227799 | - | 660 | WP_004852093.1 | exodeoxyribonuclease X | - |
| HV187_RS10775 | 2227878..2228108 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV187_RS10780 | 2228244..2228618 | + | 375 | WP_004852090.1 | CopC domain-containing protein YobA | - |
| HV187_RS10785 | 2228623..2229492 | + | 870 | WP_004852088.1 | copper homeostasis membrane protein CopD | - |
| HV187_RS10790 | 2229509..2229847 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2229946..2230114 | - | 169 | - | - | Antitoxin |
| - | 2230004..2230107 | + | 104 | - | - | Toxin |
| HV187_RS10795 | 2230232..2231191 | - | 960 | WP_177339983.1 | spore coat U domain-containing protein | - |
| HV187_RS10800 | 2231206..2233536 | - | 2331 | WP_177339984.1 | fimbria/pilus outer membrane usher protein | - |
| HV187_RS10805 | 2233539..2234303 | - | 765 | WP_049106126.1 | molecular chaperone | - |
| HV187_RS10810 | 2234322..2234840 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162333 NZ_CP055325:2230004-2230107 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT162333 NZ_CP055325:c2230114-2229946 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
