Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2010727..2010872 | Replicon | chromosome |
| Accession | NZ_CP055294 | ||
| Organism | Klebsiella pneumoniae strain KP55 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2010763..2010865 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2010727..2010872 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUW33_RS09850 (HUW33_09845) | 2005857..2007917 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HUW33_RS09855 (HUW33_09850) | 2007921..2008580 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HUW33_RS09860 (HUW33_09855) | 2008659..2008889 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUW33_RS09865 (HUW33_09860) | 2009002..2009376 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HUW33_RS09870 (HUW33_09865) | 2009380..2010249 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| HUW33_RS09875 (HUW33_09870) | 2010266..2010604 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2010727..2010872 | - | 146 | - | - | Antitoxin |
| - | 2010763..2010865 | + | 103 | - | - | Toxin |
| HUW33_RS09880 (HUW33_09875) | 2011240..2011383 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HUW33_RS09885 (HUW33_09880) | 2011488..2012456 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HUW33_RS09890 (HUW33_09885) | 2012613..2013266 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HUW33_RS09895 (HUW33_09890) | 2013263..2013454 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUW33_RS09900 (HUW33_09895) | 2013552..2013791 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUW33_RS09905 (HUW33_09900) | 2013907..2015340 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T162285 NZ_CP055294:2010763-2010865 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT162285 NZ_CP055294:c2010872-2010727 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
