Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1900552..1900697 | Replicon | chromosome |
| Accession | NZ_CP055293 | ||
| Organism | Klebsiella pneumoniae strain 200 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1900588..1900690 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1900552..1900697 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWA76_RS09210 | 1895682..1897742 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HWA76_RS09215 | 1897746..1898405 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HWA76_RS09220 | 1898484..1898714 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HWA76_RS09225 | 1898827..1899201 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| HWA76_RS09230 | 1899205..1900074 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| HWA76_RS09235 | 1900091..1900429 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1900552..1900697 | - | 146 | - | - | Antitoxin |
| - | 1900588..1900690 | + | 103 | - | - | Toxin |
| HWA76_RS09240 | 1901066..1901209 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| HWA76_RS09245 | 1901314..1902282 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| HWA76_RS09250 | 1902439..1903092 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| HWA76_RS09255 | 1903089..1903280 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HWA76_RS09260 | 1903378..1903617 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HWA76_RS09265 | 1903733..1905166 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T162266 NZ_CP055293:1900588-1900690 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT162266 NZ_CP055293:c1900697-1900552 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
