Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC-VagC |
| Location | 908357..909024 | Replicon | chromosome |
| Accession | NZ_CP055265 | ||
| Organism | Agrobacterium vitis strain CG412 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | A0A368NTV6 |
| Locus tag | AVCG412_RS04205 | Protein ID | WP_060715884.1 |
| Coordinates | 908357..908773 (-) | Length | 139 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | A0A368NSN8 |
| Locus tag | AVCG412_RS04210 | Protein ID | WP_060715883.1 |
| Coordinates | 908773..909024 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVCG412_RS04180 (AVCG412_04160) | 904294..905910 | - | 1617 | WP_114386528.1 | citramalate synthase | - |
| AVCG412_RS04185 (AVCG412_04165) | 905934..906899 | - | 966 | WP_060715888.1 | prolyl aminopeptidase | - |
| AVCG412_RS04190 (AVCG412_04170) | 906892..907404 | - | 513 | WP_060715887.1 | GFA family protein | - |
| AVCG412_RS04195 (AVCG412_04175) | 907401..907868 | - | 468 | WP_060715886.1 | GFA family protein | - |
| AVCG412_RS04200 (AVCG412_04180) | 907865..908353 | - | 489 | WP_060715885.1 | GFA family protein | - |
| AVCG412_RS04205 (AVCG412_04185) | 908357..908773 | - | 417 | WP_060715884.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| AVCG412_RS04210 (AVCG412_04190) | 908773..909024 | - | 252 | WP_060715883.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| AVCG412_RS04215 (AVCG412_04195) | 909112..909504 | - | 393 | WP_060716033.1 | VOC family protein | - |
| AVCG412_RS04220 (AVCG412_04200) | 909635..911020 | - | 1386 | WP_060715882.1 | cysteine--tRNA ligase | - |
| AVCG412_RS04225 (AVCG412_04205) | 911365..912999 | + | 1635 | WP_060716032.1 | glycoside hydrolase family 28 protein | - |
| AVCG412_RS04230 (AVCG412_04210) | 913183..913746 | + | 564 | WP_060715881.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 139 a.a. Molecular weight: 15398.58 Da Isoelectric Point: 5.9847
>T162202 WP_060715884.1 NZ_CP055265:c908773-908357 [Agrobacterium vitis]
MGFMLDTNIVSDMVRNPDGPAMERWKQTGYADLHLSAIVVSELYFGIQKRESERLRRGVETFLNNVEIAAFEGHAAHHYA
SIRNALAKAGEMIGPNGLFIAAHALSLDMILVTNNTREFARVPGLKLENWLEITTEGQ
MGFMLDTNIVSDMVRNPDGPAMERWKQTGYADLHLSAIVVSELYFGIQKRESERLRRGVETFLNNVEIAAFEGHAAHHYA
SIRNALAKAGEMIGPNGLFIAAHALSLDMILVTNNTREFARVPGLKLENWLEITTEGQ
Download Length: 417 bp
>T162202 NZ_CP071686:c4179749-4179258 [Salmonella sp. SAL-007]
ATGATCTCCACCCCTGAGCCGCTTCATGCCGGACATATTCTTACTCCGTTTTGCTGCGGTGTGGATTCTATAGATAACTG
GCTGAAACAGCGGGCGATGAAAAATCAGACCACTGGCGCGTCCCGTACCTTTGTGTGTTGTGGCAGCGATTCGAACGTAC
TGGCCTATTACTCGCTGGCGTCCAGCGCGGTCACGACGAATACCTCCCCCGGTCGCTTTCGTCGCAATATGCCTGACCCG
ATTCCGGTTGTGGTATTGGGGCGTCTGGCGGTGGATAAATCGCTTCATGGGCAGGGCGTCGCTCGGGCGCTGGTACGCGA
CGCAGGGCTGCGGGTTATTCAGGTGGCGGAGACTATCGGCATTCGTGGGATGCTGGTTCACGCCCTGTCGGATGAAGCGC
GGGAATTTTATCAGCGGGTGGGGTTTGTACCGTCGCCGATGGATCCGATGATGTTGATGGTGACGTTGGGGGATTTGGTG
GAGAGTGTTTAA
ATGATCTCCACCCCTGAGCCGCTTCATGCCGGACATATTCTTACTCCGTTTTGCTGCGGTGTGGATTCTATAGATAACTG
GCTGAAACAGCGGGCGATGAAAAATCAGACCACTGGCGCGTCCCGTACCTTTGTGTGTTGTGGCAGCGATTCGAACGTAC
TGGCCTATTACTCGCTGGCGTCCAGCGCGGTCACGACGAATACCTCCCCCGGTCGCTTTCGTCGCAATATGCCTGACCCG
ATTCCGGTTGTGGTATTGGGGCGTCTGGCGGTGGATAAATCGCTTCATGGGCAGGGCGTCGCTCGGGCGCTGGTACGCGA
CGCAGGGCTGCGGGTTATTCAGGTGGCGGAGACTATCGGCATTCGTGGGATGCTGGTTCACGCCCTGTCGGATGAAGCGC
GGGAATTTTATCAGCGGGTGGGGTTTGTACCGTCGCCGATGGATCCGATGATGTTGATGGTGACGTTGGGGGATTTGGTG
GAGAGTGTTTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9712.22 Da Isoelectric Point: 5.9111
>AT162202 WP_060715883.1 NZ_CP055265:c909024-908773 [Agrobacterium vitis]
MEQERHVRVFKNGRNRAVRIPVEFEFPGDEVIMRKEGDRIIIEPVGNARKKENLVAFLRRQGKIEEDFPDVDEGLLPLKD
VIL
MEQERHVRVFKNGRNRAVRIPVEFEFPGDEVIMRKEGDRIIIEPVGNARKKENLVAFLRRQGKIEEDFPDVDEGLLPLKD
VIL
Download Length: 252 bp
>AT162202 NZ_CP071686:c4180039-4179746 [Salmonella sp. SAL-007]
ATGCCAGCCGCAAACAGTATGGCGATGAAACGCGAAACCCTGAACCTGCGTATCAAACCCGCCGAGCGCGATCTTATTGA
TCGAGCGGCGAAAGCCAGAGGGAAAAACCGCACTGACTTTGTGCTGGAAGCTGCCCGTGCTGCCGCCGAGGAAGCGCTGA
TCGAACAACGCATCATTATGGCCGATCCAGAGGCTTATCAGGAGTTTCTCGTTCGTTTGGATCAAACACCTTCACCTAAT
GCCGCACTGCGTAAAACCATGCAGACCCCTGCGCCGTGGGAGCAGGAAAAATGA
ATGCCAGCCGCAAACAGTATGGCGATGAAACGCGAAACCCTGAACCTGCGTATCAAACCCGCCGAGCGCGATCTTATTGA
TCGAGCGGCGAAAGCCAGAGGGAAAAACCGCACTGACTTTGTGCTGGAAGCTGCCCGTGCTGCCGCCGAGGAAGCGCTGA
TCGAACAACGCATCATTATGGCCGATCCAGAGGCTTATCAGGAGTTTCTCGTTCGTTTGGATCAAACACCTTCACCTAAT
GCCGCACTGCGTAAAACCATGCAGACCCCTGCGCCGTGGGAGCAGGAAAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A368NTV6 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A368NSN8 |