Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1964023..1964294 | Replicon | chromosome |
| Accession | NZ_CP055259 | ||
| Organism | Escherichia coli strain AH62 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1964153..1964256 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1964023..1964294 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HU676_RS09325 | 1960578..1961240 | - | 663 | WP_174580251.1 | exodeoxyribonuclease X | - |
| HU676_RS09330 | 1961264..1961920 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| HU676_RS09335 | 1962022..1962252 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HU676_RS09340 | 1962391..1962765 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HU676_RS09345 | 1962769..1963641 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HU676_RS09350 | 1963654..1963995 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1964023..1964294 | - | 272 | - | - | Antitoxin |
| - | 1964153..1964256 | + | 104 | - | - | Toxin |
| HU676_RS09355 | 1964391..1965047 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| HU676_RS09360 | 1965048..1965239 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HU676_RS09365 | 1965344..1965580 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| HU676_RS09370 | 1965698..1967137 | - | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162168 NZ_CP055259:1964153-1964256 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT162168 NZ_CP055259:c1964294-1964023 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
