Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2643362..2643633 | Replicon | chromosome |
| Accession | NZ_CP055251 | ||
| Organism | Escherichia coli strain AH01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2643400..2643503 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2643362..2643633 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUU83_RS12795 | 2640519..2641958 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUU83_RS12800 | 2642076..2642312 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HUU83_RS12805 | 2642417..2642608 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HUU83_RS12810 | 2642609..2643265 | - | 657 | WP_124783504.1 | protein-serine/threonine phosphatase | - |
| - | 2643362..2643633 | + | 272 | - | - | Antitoxin |
| - | 2643400..2643503 | - | 104 | - | - | Toxin |
| HUU83_RS12815 | 2643661..2644002 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HUU83_RS12820 | 2644015..2644887 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HUU83_RS12825 | 2644891..2645265 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HUU83_RS12830 | 2645404..2645634 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUU83_RS12835 | 2645736..2646392 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HUU83_RS12840 | 2646416..2647078 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162098 NZ_CP055251:c2643503-2643400 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT162098 NZ_CP055251:2643362-2643633 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
