Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2071976..2072119 | Replicon | chromosome |
| Accession | NZ_CP055247 | ||
| Organism | Citrobacter freundii strain ZY198 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2072011..2072114 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2071976..2072119 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTH18_RS09900 | 2067128..2068030 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| GTH18_RS09905 | 2068349..2068540 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| GTH18_RS09910 | 2069033..2069620 | - | 588 | WP_106107223.1 | hypothetical protein | - |
| GTH18_RS09915 | 2070246..2070620 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| GTH18_RS09920 | 2070624..2071496 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| GTH18_RS09925 | 2071517..2071855 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2071976..2072119 | - | 144 | - | - | Antitoxin |
| - | 2072011..2072114 | + | 104 | - | - | Toxin |
| GTH18_RS09930 | 2072192..2073277 | - | 1086 | WP_065944794.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| GTH18_RS09935 | 2073246..2073518 | - | 273 | WP_049040229.1 | excisionase | - |
| GTH18_RS09940 | 2073583..2073825 | - | 243 | WP_003841647.1 | DUF4060 family protein | - |
| GTH18_RS09945 | 2073812..2074015 | - | 204 | WP_003841645.1 | hypothetical protein | - |
| GTH18_RS09950 | 2074008..2074352 | - | 345 | WP_048998009.1 | hypothetical protein | - |
| GTH18_RS09955 | 2074387..2075478 | - | 1092 | WP_016247084.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2043025..2133089 | 90064 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162065 NZ_CP055247:2072011-2072114 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT162065 NZ_CP055247:c2072119-2071976 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
