Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 755313..755584 | Replicon | chromosome |
| Accession | NZ_CP055219 | ||
| Organism | Shigella flexneri strain STEFF_12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 755351..755454 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 755313..755584 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ41_RS03790 | 752470..753909 | + | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ41_RS03795 | 754027..754263 | + | 237 | WP_001338166.1 | YebV family protein | - |
| HUZ41_RS03800 | 754368..754559 | + | 192 | WP_001338167.1 | YebW family protein | - |
| HUZ41_RS03805 | 754560..755216 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 755313..755584 | + | 272 | - | - | Antitoxin |
| - | 755351..755454 | - | 104 | - | - | Toxin |
| HUZ41_RS03810 | 755612..755953 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HUZ41_RS03815 | 755966..756838 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HUZ41_RS03820 | 756842..757216 | - | 375 | WP_024238488.1 | CopC domain-containing protein YobA | - |
| HUZ41_RS03825 | 757355..757585 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ41_RS03830 | 757687..758343 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ41_RS03835 | 758367..759029 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161993 NZ_CP055219:c755454-755351 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161993 NZ_CP055219:755313-755584 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
