Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hipBA/HipA-HipB |
| Location | 2837150..2838753 | Replicon | chromosome |
| Accession | NZ_CP055216 | ||
| Organism | Raoultella ornithinolytica strain STEFF_15 | ||
Toxin (Protein)
| Gene name | hipA | Uniprot ID | A0A1Y6GHD8 |
| Locus tag | HUZ43_RS13490 | Protein ID | WP_015584335.1 |
| Coordinates | 2837150..2838481 (-) | Length | 444 a.a. |
Antitoxin (Protein)
| Gene name | hipB | Uniprot ID | A0A808YAX5 |
| Locus tag | HUZ43_RS13495 | Protein ID | WP_032717448.1 |
| Coordinates | 2838481..2838753 (-) | Length | 91 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ43_RS13475 (HUZ43_13430) | 2833024..2833938 | - | 915 | WP_015584333.1 | branched-chain amino acid ABC transporter permease | - |
| HUZ43_RS13480 (HUZ43_13435) | 2834038..2835096 | - | 1059 | WP_162180097.1 | branched-chain amino acid ABC transporter substrate-binding protein | - |
| HUZ43_RS13485 (HUZ43_13440) | 2835811..2837217 | + | 1407 | WP_239614550.1 | glycoside hydrolase family 10 protein | - |
| HUZ43_RS13490 (HUZ43_13445) | 2837150..2838481 | - | 1332 | WP_015584335.1 | type II toxin-antitoxin system HipA family toxin | Toxin |
| HUZ43_RS13495 (HUZ43_13450) | 2838481..2838753 | - | 273 | WP_032717448.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin |
| HUZ43_RS13500 (HUZ43_13455) | 2838956..2839510 | - | 555 | WP_004861926.1 | RNA polymerase sigma factor | - |
| HUZ43_RS13505 (HUZ43_13460) | 2839516..2839941 | - | 426 | WP_032724724.1 | hypothetical protein | - |
| HUZ43_RS13510 (HUZ43_13465) | 2840074..2841027 | - | 954 | WP_004861921.1 | hypothetical protein | - |
| HUZ43_RS13515 (HUZ43_13470) | 2841242..2841874 | - | 633 | WP_239613372.1 | class I SAM-dependent methyltransferase | - |
| HUZ43_RS13520 (HUZ43_13475) | 2841894..2843135 | - | 1242 | WP_015584340.1 | sensor domain-containing diguanylate cyclase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 444 a.a. Molecular weight: 49327.66 Da Isoelectric Point: 6.7012
>T161983 WP_015584335.1 NZ_CP055216:c2838481-2837150 [Raoultella ornithinolytica]
MATLVTWMNNERVGELIKQANGAHLFRYEEAWMRNPRARPLSLSLPLQYGNITDEAVFNYFDNLLPDSPRVRDRIVKRYQ
ARSKQPFDLLAEIGRDSVGAVTLLPPGENAPRGALSWEPLDNHALDALLTAYQSDIPLGMVNEHDDFRISVAGAQEKTAL
LKIGEQWCIPTGTTPTTHIIKLPIGEIKQPDAVLDLSESVDNEYLCLALARALGFAVPPASIIQTASIRALAVERFDRRW
AQEKTVLLRLPQEDLCQAFGIPSSIKYESDGGPGIRAIMAFLVGSSEALEDRYNFMKFMVFQWLIGATDGHAKNFSIFLQ
PGGSYRLTPFYDIISAFPLLGGKGLHLSDLKLSMSLKASKGRKTEIQTLYPRHFLATAKEVGFAQQQMLEILRYFVDNVP
RAVEAVKGTLPPDFSQPVYEAITDRLLWVHSRLQNAMAASPSG
MATLVTWMNNERVGELIKQANGAHLFRYEEAWMRNPRARPLSLSLPLQYGNITDEAVFNYFDNLLPDSPRVRDRIVKRYQ
ARSKQPFDLLAEIGRDSVGAVTLLPPGENAPRGALSWEPLDNHALDALLTAYQSDIPLGMVNEHDDFRISVAGAQEKTAL
LKIGEQWCIPTGTTPTTHIIKLPIGEIKQPDAVLDLSESVDNEYLCLALARALGFAVPPASIIQTASIRALAVERFDRRW
AQEKTVLLRLPQEDLCQAFGIPSSIKYESDGGPGIRAIMAFLVGSSEALEDRYNFMKFMVFQWLIGATDGHAKNFSIFLQ
PGGSYRLTPFYDIISAFPLLGGKGLHLSDLKLSMSLKASKGRKTEIQTLYPRHFLATAKEVGFAQQQMLEILRYFVDNVP
RAVEAVKGTLPPDFSQPVYEAITDRLLWVHSRLQNAMAASPSG
Download Length: 1332 bp
>T161983 NZ_CP071441:3521370-3521720 [Escherichia coli]
ATGGTAAAGAAAAGTGAATTTGAACGGGGAGACATTGTGCTGGTTGGCTTTGATCCAGCAAGCGGCCATGAACAGCAAGG
TGCTGGTCGACCTGCGCTTGTGCTCTCCGTTCAAGCCTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGG
GCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTG
AATCAGGTGCGGATGATGGATCTACGCGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGC
GTTATTACGCTTGCAGGCGGTGGTGGAATAA
ATGGTAAAGAAAAGTGAATTTGAACGGGGAGACATTGTGCTGGTTGGCTTTGATCCAGCAAGCGGCCATGAACAGCAAGG
TGCTGGTCGACCTGCGCTTGTGCTCTCCGTTCAAGCCTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGG
GCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTG
AATCAGGTGCGGATGATGGATCTACGCGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGC
GTTATTACGCTTGCAGGCGGTGGTGGAATAA
Antitoxin
Download Length: 91 a.a. Molecular weight: 10365.71 Da Isoelectric Point: 5.7971
>AT161983 WP_032717448.1 NZ_CP055216:c2838753-2838481 [Raoultella ornithinolytica]
MSPSPTIYSPVQLANYLKLVRQKNQWTQSELAQRMGIKQATVSNFENHPEKTTLTTVFKILQSLELSMAICEKNAPDTDD
NRDNPRDLEW
MSPSPTIYSPVQLANYLKLVRQKNQWTQSELAQRMGIKQATVSNFENHPEKTTLTTVFKILQSLELSMAICEKNAPDTDD
NRDNPRDLEW
Download Length: 273 bp
>AT161983 NZ_CP071441:3521125-3521376 [Escherichia coli]
ATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACA
GCCGGGGCAGAGCGTGGAAGCGCAGGTGAGCAACAACCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATG
AACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCCTGCGGGTGAC
GAAATATGGTAA
ATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACA
GCCGGGGCAGAGCGTGGAAGCGCAGGTGAGCAACAACCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATG
AACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCCTGCGGGTGAC
GAAATATGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1Y6GHD8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A808YAX5 |