Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2091542..2091708 | Replicon | chromosome |
| Accession | NZ_CP055216 | ||
| Organism | Raoultella ornithinolytica strain STEFF_15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2091600..2091703 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2091542..2091708 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ43_RS09775 (HUZ43_09765) | 2086680..2088740 | + | 2061 | WP_032724251.1 | oligopeptidase B | - |
| HUZ43_RS09780 (HUZ43_09770) | 2088746..2089405 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| HUZ43_RS09785 (HUZ43_09775) | 2089484..2089714 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| HUZ43_RS09790 (HUZ43_09780) | 2089841..2090215 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| HUZ43_RS09795 (HUZ43_09785) | 2090219..2091088 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| HUZ43_RS09800 (HUZ43_09790) | 2091105..2091443 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 2091542..2091708 | - | 167 | - | - | Antitoxin |
| - | 2091600..2091703 | + | 104 | - | - | Toxin |
| HUZ43_RS09805 (HUZ43_09795) | 2092013..2092156 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| HUZ43_RS09810 (HUZ43_09800) | 2092277..2093248 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| HUZ43_RS09815 (HUZ43_09805) | 2093391..2094035 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| HUZ43_RS09820 (HUZ43_09810) | 2094041..2094232 | - | 192 | WP_004863962.1 | YebW family protein | - |
| HUZ43_RS09825 (HUZ43_09815) | 2094326..2094565 | - | 240 | WP_004863958.1 | YebV family protein | - |
| HUZ43_RS09830 (HUZ43_09820) | 2094680..2096113 | - | 1434 | WP_239614318.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161973 NZ_CP055216:2091600-2091703 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT161973 NZ_CP055216:c2091708-2091542 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
