Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1832091..1832238 | Replicon | chromosome |
| Accession | NZ_CP055213 | ||
| Organism | Klebsiella quasipneumoniae strain STEFF_21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1832132..1832234 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1832091..1832238 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ48_RS08810 | 1827226..1829286 | + | 2061 | WP_237902562.1 | oligopeptidase B | - |
| HUZ48_RS08815 | 1829290..1829949 | - | 660 | WP_032453373.1 | exodeoxyribonuclease X | - |
| HUZ48_RS08820 | 1830028..1830258 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ48_RS08825 | 1830371..1830745 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| HUZ48_RS08830 | 1830749..1831618 | + | 870 | WP_048297809.1 | copper homeostasis membrane protein CopD | - |
| HUZ48_RS08835 | 1831635..1831973 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1832091..1832238 | - | 148 | - | - | Antitoxin |
| - | 1832132..1832234 | + | 103 | - | - | Toxin |
| HUZ48_RS08840 | 1832613..1832756 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| HUZ48_RS08845 | 1832857..1833825 | - | 969 | WP_172607013.1 | VirK/YbjX family protein | - |
| HUZ48_RS08850 | 1833982..1834635 | + | 654 | WP_102002723.1 | protein-serine/threonine phosphatase | - |
| HUZ48_RS08855 | 1834632..1834823 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ48_RS08860 | 1834921..1835160 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ48_RS08865 | 1835276..1836706 | - | 1431 | WP_237902563.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T161958 NZ_CP055213:1832132-1832234 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT161958 NZ_CP055213:c1832238-1832091 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
