Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1107303..1107448 | Replicon | chromosome |
| Accession | NZ_CP055210 | ||
| Organism | Klebsiella pneumoniae strain STEFF_2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1107310..1107412 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1107303..1107448 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ38_RS05460 | 1102834..1104267 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ38_RS05465 | 1104383..1104622 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ38_RS05470 | 1104720..1104911 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ38_RS05475 | 1104908..1105561 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HUZ38_RS05480 | 1105718..1106686 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HUZ38_RS05485 | 1106791..1106934 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1107303..1107448 | + | 146 | - | - | Antitoxin |
| - | 1107310..1107412 | - | 103 | - | - | Toxin |
| HUZ38_RS05490 | 1107571..1107909 | - | 339 | WP_002911404.1 | YebY family protein | - |
| HUZ38_RS05495 | 1107926..1108795 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HUZ38_RS05500 | 1108799..1109173 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HUZ38_RS05505 | 1109286..1109516 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ38_RS05510 | 1109595..1110254 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| HUZ38_RS05515 | 1110258..1112318 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T161931 NZ_CP055210:c1107412-1107310 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT161931 NZ_CP055210:1107303-1107448 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
