Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2138233..2138504 | Replicon | chromosome |
| Accession | NZ_CP055199 | ||
| Organism | Shigella flexneri strain STEFF_3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2138363..2138466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2138233..2138504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ39_RS10420 | 2134789..2135451 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ39_RS10425 | 2135474..2136130 | - | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ39_RS10430 | 2136232..2136462 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ39_RS10435 | 2136601..2136975 | + | 375 | WP_021577594.1 | CopC domain-containing protein YobA | - |
| HUZ39_RS10440 | 2136979..2137851 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HUZ39_RS10445 | 2137864..2138205 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2138233..2138504 | - | 272 | - | - | Antitoxin |
| - | 2138363..2138466 | + | 104 | - | - | Toxin |
| HUZ39_RS10450 | 2138601..2139257 | + | 657 | WP_106464872.1 | protein-serine/threonine phosphatase | - |
| HUZ39_RS10455 | 2139258..2139449 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ39_RS10460 | 2139554..2139790 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ39_RS10465 | 2139908..2141347 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161903 NZ_CP055199:2138363-2138466 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161903 NZ_CP055199:c2138504-2138233 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
