Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1964555..1964826 | Replicon | chromosome |
| Accession | NZ_CP055181 | ||
| Organism | Shigella flexneri strain STEFF_17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1964685..1964788 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1964555..1964826 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ45_RS09505 | 1961111..1961773 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| HUZ45_RS09510 | 1961796..1962452 | - | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ45_RS09515 | 1962554..1962784 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ45_RS09520 | 1962923..1963297 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUZ45_RS09525 | 1963301..1964173 | + | 873 | WP_000879287.1 | copper homeostasis membrane protein CopD | - |
| HUZ45_RS09530 | 1964186..1964527 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1964555..1964826 | - | 272 | - | - | Antitoxin |
| - | 1964685..1964788 | + | 104 | - | - | Toxin |
| HUZ45_RS09535 | 1964923..1965579 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| HUZ45_RS09540 | 1965580..1965771 | - | 192 | WP_001313035.1 | YebW family protein | - |
| HUZ45_RS09545 | 1965876..1966112 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ45_RS09550 | 1966230..1967669 | - | 1440 | WP_096320361.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161800 NZ_CP055181:1964685-1964788 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161800 NZ_CP055181:c1964826-1964555 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
