Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2045585..2045856 | Replicon | chromosome |
| Accession | NZ_CP055167 | ||
| Organism | Shigella flexneri strain STEFF_24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2045715..2045818 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2045585..2045856 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ50_RS09860 | 2042140..2042802 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ50_RS09865 | 2042826..2043482 | - | 657 | WP_000011659.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ50_RS09870 | 2043584..2043814 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ50_RS09875 | 2043953..2044327 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUZ50_RS09880 | 2044331..2045203 | + | 873 | WP_106664700.1 | copper homeostasis membrane protein CopD | - |
| HUZ50_RS09885 | 2045216..2045557 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2045585..2045856 | - | 272 | - | - | Antitoxin |
| - | 2045715..2045818 | + | 104 | - | - | Toxin |
| HUZ50_RS09890 | 2045953..2046609 | + | 657 | WP_063625304.1 | protein-serine/threonine phosphatase | - |
| HUZ50_RS09895 | 2046610..2046801 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ50_RS09900 | 2046906..2047142 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ50_RS09905 | 2047260..2048699 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161678 NZ_CP055167:2045715-2045818 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161678 NZ_CP055167:c2045856-2045585 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
