Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1834706..1834851 | Replicon | chromosome |
| Accession | NZ_CP055119 | ||
| Organism | Klebsiella pneumoniae strain SWHIN_100 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1834742..1834844 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1834706..1834851 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ80_RS08935 | 1829836..1831896 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HUZ80_RS08940 | 1831900..1832559 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| HUZ80_RS08945 | 1832638..1832868 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ80_RS08950 | 1832981..1833355 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HUZ80_RS08955 | 1833359..1834228 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| HUZ80_RS08960 | 1834245..1834583 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1834706..1834851 | - | 146 | - | - | Antitoxin |
| - | 1834742..1834844 | + | 103 | - | - | Toxin |
| HUZ80_RS08965 | 1835219..1835362 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HUZ80_RS08970 | 1835467..1836435 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HUZ80_RS08975 | 1836592..1837245 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| HUZ80_RS08980 | 1837242..1837433 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ80_RS08985 | 1837531..1837770 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ80_RS08990 | 1837886..1839319 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T161613 NZ_CP055119:1834742-1834844 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT161613 NZ_CP055119:c1834851-1834706 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
