Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 365401..365672 | Replicon | chromosome |
| Accession | NZ_CP055113 | ||
| Organism | Shigella flexneri strain SWHIN_101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 365531..365634 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 365401..365672 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ81_RS01775 | 361956..362618 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ81_RS01780 | 362642..363298 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ81_RS01785 | 363400..363630 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ81_RS01790 | 363769..364143 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HUZ81_RS01795 | 364147..365019 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| HUZ81_RS01800 | 365032..365373 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 365401..365672 | - | 272 | - | - | Antitoxin |
| - | 365531..365634 | + | 104 | - | - | Toxin |
| HUZ81_RS01805 | 365769..366425 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| HUZ81_RS01810 | 366426..366617 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ81_RS01815 | 366722..366958 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ81_RS01820 | 367076..368515 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161580 NZ_CP055113:365531-365634 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161580 NZ_CP055113:c365672-365401 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
