Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1807718..1807863 | Replicon | chromosome |
| Accession | NZ_CP055106 | ||
| Organism | Klebsiella pneumoniae strain SWHIN_106 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1807754..1807856 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1807718..1807863 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ83_RS08735 | 1802848..1804908 | + | 2061 | WP_239612436.1 | oligopeptidase B | - |
| HUZ83_RS08740 | 1804912..1805571 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| HUZ83_RS08745 | 1805650..1805880 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ83_RS08750 | 1805993..1806367 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HUZ83_RS08755 | 1806371..1807240 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| HUZ83_RS08760 | 1807257..1807595 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1807718..1807863 | - | 146 | - | - | Antitoxin |
| - | 1807754..1807856 | + | 103 | - | - | Toxin |
| HUZ83_RS08765 | 1808231..1808374 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HUZ83_RS08770 | 1808479..1809447 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HUZ83_RS08775 | 1809604..1810257 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| HUZ83_RS08780 | 1810254..1810445 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ83_RS08785 | 1810543..1810782 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ83_RS08790 | 1810898..1812331 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T161524 NZ_CP055106:1807754-1807856 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT161524 NZ_CP055106:c1807863-1807718 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
