Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1969215..1969486 | Replicon | chromosome |
| Accession | NZ_CP055092 | ||
| Organism | Shigella flexneri strain SWHIN_110 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1969345..1969448 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1969215..1969486 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ87_RS09515 | 1965770..1966432 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ87_RS09520 | 1966456..1967112 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ87_RS09525 | 1967214..1967444 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ87_RS09530 | 1967583..1967957 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUZ87_RS09535 | 1967961..1968833 | + | 873 | WP_046464082.1 | copper homeostasis membrane protein CopD | - |
| HUZ87_RS09540 | 1968846..1969187 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1969215..1969486 | - | 272 | - | - | Antitoxin |
| - | 1969345..1969448 | + | 104 | - | - | Toxin |
| HUZ87_RS09545 | 1969583..1970239 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HUZ87_RS09550 | 1970240..1970431 | - | 192 | WP_000457842.1 | YebW family protein | - |
| HUZ87_RS09555 | 1970536..1970772 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ87_RS09560 | 1970890..1972329 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161449 NZ_CP055092:1969345-1969448 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161449 NZ_CP055092:c1969486-1969215 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
