Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2789753..2789896 | Replicon | chromosome |
| Accession | NZ_CP055089 | ||
| Organism | Citrobacter portucalensis strain SWHIN_111 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2789758..2789861 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2789753..2789896 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ88_RS13360 (HUZ88_13320) | 2786943..2788331 | + | 1389 | WP_219013533.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ88_RS13365 (HUZ88_13325) | 2788432..2788668 | + | 237 | WP_029139506.1 | YebV family protein | - |
| HUZ88_RS13370 (HUZ88_13330) | 2788771..2788962 | + | 192 | WP_003034941.1 | YebW family protein | - |
| HUZ88_RS13375 (HUZ88_13335) | 2788963..2789604 | - | 642 | WP_048216182.1 | protein-serine/threonine phosphatase | - |
| - | 2789753..2789896 | + | 144 | - | - | Antitoxin |
| - | 2789758..2789861 | - | 104 | - | - | Toxin |
| HUZ88_RS13380 (HUZ88_13340) | 2790017..2790355 | - | 339 | WP_239605316.1 | YebY family protein | - |
| HUZ88_RS13385 (HUZ88_13345) | 2790376..2791248 | - | 873 | WP_239605317.1 | copper homeostasis membrane protein CopD | - |
| HUZ88_RS13390 (HUZ88_13350) | 2791252..2791626 | - | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| HUZ88_RS13395 (HUZ88_13355) | 2791770..2792000 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HUZ88_RS13400 (HUZ88_13360) | 2792107..2792763 | + | 657 | WP_008785043.1 | carbon-nitrogen hydrolase family protein | - |
| HUZ88_RS13405 (HUZ88_13365) | 2792787..2793449 | + | 663 | WP_239605318.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161427 NZ_CP055089:c2789861-2789758 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT161427 NZ_CP055089:2789753-2789896 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
