Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2036066..2036337 | Replicon | chromosome |
| Accession | NZ_CP055075 | ||
| Organism | Shigella flexneri strain SWHIN_116 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2036196..2036299 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2036066..2036337 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ90_RS09800 | 2032621..2033283 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ90_RS09805 | 2033307..2033963 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ90_RS09810 | 2034065..2034295 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ90_RS09815 | 2034434..2034808 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUZ90_RS09820 | 2034812..2035684 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HUZ90_RS09825 | 2035697..2036038 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2036066..2036337 | - | 272 | - | - | Antitoxin |
| - | 2036196..2036299 | + | 104 | - | - | Toxin |
| HUZ90_RS09830 | 2036434..2037090 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| HUZ90_RS09835 | 2037091..2037282 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HUZ90_RS09840 | 2037387..2037623 | - | 237 | WP_001338166.1 | YebV family protein | - |
| HUZ90_RS09845 | 2037741..2039180 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161376 NZ_CP055075:2036196-2036299 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161376 NZ_CP055075:c2036337-2036066 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
