Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1974222..1974367 | Replicon | chromosome |
| Accession | NZ_CP055061 | ||
| Organism | Klebsiella pneumoniae strain SWHE3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1974258..1974360 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1974222..1974367 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ66_RS09560 (HUZ66_09550) | 1969352..1971412 | + | 2061 | WP_064145333.1 | oligopeptidase B | - |
| HUZ66_RS09565 (HUZ66_09555) | 1971416..1972075 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HUZ66_RS09570 (HUZ66_09560) | 1972154..1972384 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ66_RS09575 (HUZ66_09565) | 1972497..1972871 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HUZ66_RS09580 (HUZ66_09570) | 1972875..1973744 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HUZ66_RS09585 (HUZ66_09575) | 1973761..1974099 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1974222..1974367 | - | 146 | - | - | Antitoxin |
| - | 1974258..1974360 | + | 103 | - | - | Toxin |
| HUZ66_RS09590 (HUZ66_09580) | 1974736..1974879 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HUZ66_RS09595 (HUZ66_09585) | 1974984..1975952 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HUZ66_RS09600 (HUZ66_09590) | 1976109..1976762 | + | 654 | WP_064145335.1 | protein-serine/threonine phosphatase | - |
| HUZ66_RS09605 (HUZ66_09595) | 1976759..1976950 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ66_RS09610 (HUZ66_09600) | 1977048..1977287 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ66_RS09615 (HUZ66_09605) | 1977403..1978836 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T161302 NZ_CP055061:1974258-1974360 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT161302 NZ_CP055061:c1974367-1974222 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
