Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2706133..2706404 | Replicon | chromosome |
| Accession | NZ_CP055055 | ||
| Organism | Shigella dysenteriae strain SWHEFF_49 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2706171..2706274 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2706133..2706404 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ68_RS12930 | 2703290..2704729 | + | 1440 | WP_033814685.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ68_RS12935 | 2704847..2705083 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ68_RS12940 | 2705188..2705379 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ68_RS12945 | 2705383..2706036 | - | 654 | WP_239593892.1 | protein-serine/threonine phosphatase | - |
| - | 2706133..2706404 | + | 272 | - | - | Antitoxin |
| - | 2706171..2706274 | - | 104 | - | - | Toxin |
| HUZ68_RS12950 | 2706432..2706773 | - | 342 | WP_000976483.1 | YebY family protein | - |
| HUZ68_RS12955 | 2706785..2707657 | - | 873 | WP_033814654.1 | copper homeostasis membrane protein CopD | - |
| HUZ68_RS12960 | 2707661..2708035 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUZ68_RS12965 | 2708174..2708404 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ68_RS12970 | 2708506..2709162 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ68_RS12975 | 2709186..2709848 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161256 NZ_CP055055:c2706274-2706171 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161256 NZ_CP055055:2706133-2706404 [Shigella dysenteriae]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTAAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTAAGGCGGTTTTTTTAT
