Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 291585..291856 | Replicon | chromosome |
| Accession | NZ_CP055048 | ||
| Organism | Escherichia coli strain SWHEFF_58 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 291715..291818 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 291585..291856 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ70_RS01460 | 288140..288802 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ70_RS01465 | 288826..289482 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ70_RS01470 | 289584..289814 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ70_RS01475 | 289953..290327 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUZ70_RS01480 | 290331..291203 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| HUZ70_RS01485 | 291216..291557 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 291585..291856 | - | 272 | - | - | Antitoxin |
| - | 291715..291818 | + | 104 | - | - | Toxin |
| HUZ70_RS01490 | 291953..292609 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| HUZ70_RS01495 | 292610..292801 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ70_RS01500 | 292906..293142 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ70_RS01505 | 293260..294699 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 282412..307696 | 25284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161195 NZ_CP055048:291715-291818 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161195 NZ_CP055048:c291856-291585 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
