Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2657396..2657667 | Replicon | chromosome |
| Accession | NZ_CP055041 | ||
| Organism | Shigella flexneri strain SWHEFF_59 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2657434..2657537 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2657396..2657667 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ71_RS12975 | 2654553..2655992 | + | 1440 | WP_032181738.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ71_RS12980 | 2656110..2656346 | + | 237 | WP_001338166.1 | YebV family protein | - |
| HUZ71_RS12985 | 2656451..2656642 | + | 192 | WP_001338167.1 | YebW family protein | - |
| HUZ71_RS12990 | 2656643..2657299 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2657396..2657667 | + | 272 | - | - | Antitoxin |
| - | 2657434..2657537 | - | 104 | - | - | Toxin |
| HUZ71_RS12995 | 2657695..2658036 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HUZ71_RS13000 | 2658049..2658921 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HUZ71_RS13005 | 2658925..2659299 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUZ71_RS13010 | 2659438..2659668 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ71_RS13015 | 2659770..2660426 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ71_RS13020 | 2660450..2661112 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161177 NZ_CP055041:c2657537-2657434 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161177 NZ_CP055041:2657396-2657667 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
