Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061136..2061407 | Replicon | chromosome |
| Accession | NZ_CP055037 | ||
| Organism | Shigella flexneri strain SWHEFF_60 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061266..2061369 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061136..2061407 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ72_RS09835 | 2057691..2058353 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ72_RS09840 | 2058377..2059033 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ72_RS09845 | 2059135..2059365 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ72_RS09850 | 2059504..2059878 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HUZ72_RS09855 | 2059882..2060754 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HUZ72_RS09860 | 2060767..2061108 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2061136..2061407 | - | 272 | - | - | Antitoxin |
| - | 2061266..2061369 | + | 104 | - | - | Toxin |
| HUZ72_RS09865 | 2061504..2062160 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| HUZ72_RS09870 | 2062161..2062352 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HUZ72_RS09875 | 2062457..2062693 | - | 237 | WP_001338166.1 | YebV family protein | - |
| HUZ72_RS09880 | 2062811..2064250 | - | 1440 | WP_239637521.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161144 NZ_CP055037:2061266-2061369 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161144 NZ_CP055037:c2061407-2061136 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
