Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2165021..2165292 | Replicon | chromosome |
| Accession | NZ_CP055022 | ||
| Organism | Escherichia coli strain SWHEFF_68 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2165151..2165254 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2165021..2165292 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ76_RS10290 | 2161576..2162238 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ76_RS10295 | 2162262..2162918 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ76_RS10300 | 2163020..2163250 | - | 231 | WP_077516099.1 | DNA polymerase III subunit theta | - |
| HUZ76_RS10305 | 2163389..2163763 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| HUZ76_RS10310 | 2163767..2164639 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| HUZ76_RS10315 | 2164652..2164993 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2165021..2165292 | - | 272 | - | - | Antitoxin |
| - | 2165151..2165254 | + | 104 | - | - | Toxin |
| HUZ76_RS10320 | 2165389..2166045 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| HUZ76_RS10325 | 2166046..2166237 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ76_RS10330 | 2166342..2166578 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ76_RS10335 | 2166696..2168135 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161053 NZ_CP055022:2165151-2165254 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161053 NZ_CP055022:c2165292-2165021 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
