Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2772855..2773126 | Replicon | chromosome |
| Accession | NZ_CP055019 | ||
| Organism | Escherichia coli strain SWHEFF_69 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2772893..2772995 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2772855..2773126 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ77_RS13125 | 2770012..2771451 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ77_RS13130 | 2771569..2771805 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ77_RS13135 | 2771910..2772101 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ77_RS13140 | 2772102..2772758 | - | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| - | 2772855..2773126 | + | 272 | - | - | Antitoxin |
| - | 2772893..2772995 | - | 103 | - | - | Toxin |
| HUZ77_RS13145 | 2773154..2773495 | - | 342 | WP_000976484.1 | YebY family protein | - |
| HUZ77_RS13150 | 2773508..2774380 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| HUZ77_RS13155 | 2774384..2774758 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| HUZ77_RS13160 | 2774897..2775127 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ77_RS13165 | 2775229..2775885 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ77_RS13170 | 2775909..2776571 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T161021 NZ_CP055019:c2772995-2772893 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161021 NZ_CP055019:2772855-2773126 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
