Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 850593..850864 | Replicon | chromosome |
| Accession | NZ_CP055015 | ||
| Organism | Shigella flexneri strain SWHEFF_71 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 850631..850734 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 850593..850864 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ78_RS04305 | 847750..849189 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ78_RS04310 | 849307..849543 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ78_RS04315 | 849648..849839 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ78_RS04320 | 849840..850496 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 850593..850864 | + | 272 | - | - | Antitoxin |
| - | 850631..850734 | - | 104 | - | - | Toxin |
| HUZ78_RS04325 | 850892..851233 | - | 342 | WP_000976492.1 | YebY family protein | - |
| HUZ78_RS04330 | 851246..852118 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HUZ78_RS04335 | 852122..852496 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HUZ78_RS04340 | 852635..852865 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ78_RS04345 | 852967..853623 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ78_RS04350 | 853647..854309 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T160983 NZ_CP055015:c850734-850631 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT160983 NZ_CP055015:850593-850864 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
