Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1922768..1922915 | Replicon | chromosome |
| Accession | NZ_CP055010 | ||
| Organism | Klebsiella quasipneumoniae strain SWHEFF_72 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1922809..1922911 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1922768..1922915 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ79_RS09245 | 1917903..1919963 | + | 2061 | WP_094333683.1 | oligopeptidase B | - |
| HUZ79_RS09250 | 1919967..1920626 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| HUZ79_RS09255 | 1920705..1920935 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ79_RS09260 | 1921048..1921422 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| HUZ79_RS09265 | 1921426..1922295 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| HUZ79_RS09270 | 1922312..1922650 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1922768..1922915 | - | 148 | - | - | Antitoxin |
| - | 1922809..1922911 | + | 103 | - | - | Toxin |
| HUZ79_RS09275 | 1923299..1923442 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| HUZ79_RS09280 | 1923546..1924514 | - | 969 | WP_127113430.1 | VirK/YbjX family protein | - |
| HUZ79_RS09285 | 1924671..1925324 | + | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| HUZ79_RS09290 | 1925321..1925512 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ79_RS09295 | 1925610..1925849 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ79_RS09300 | 1925966..1927399 | - | 1434 | WP_130971986.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T160964 NZ_CP055010:1922809-1922911 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT160964 NZ_CP055010:c1922915-1922768 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
