Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1938833..1938977 | Replicon | chromosome |
| Accession | NZ_CP055005 | ||
| Organism | Klebsiella pneumoniae strain STIN_77 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1938869..1938971 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1938833..1938977 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ53_RS09370 (HUZ53_09370) | 1933963..1936023 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HUZ53_RS09375 (HUZ53_09375) | 1936027..1936686 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HUZ53_RS09380 (HUZ53_09380) | 1936765..1936995 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ53_RS09385 (HUZ53_09385) | 1937108..1937482 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HUZ53_RS09390 (HUZ53_09390) | 1937486..1938355 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| HUZ53_RS09395 (HUZ53_09395) | 1938372..1938710 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1938833..1938977 | - | 145 | - | - | Antitoxin |
| - | 1938869..1938971 | + | 103 | - | - | Toxin |
| HUZ53_RS09400 (HUZ53_09400) | 1939104..1939385 | - | 282 | Protein_1836 | tyrosine-type recombinase/integrase | - |
| HUZ53_RS09405 (HUZ53_09405) | 1939462..1939941 | + | 480 | WP_032419797.1 | lysis protein | - |
| HUZ53_RS09410 | 1940396..1940591 | + | 196 | Protein_1838 | DNA polymerase V | - |
| HUZ53_RS09415 (HUZ53_09410) | 1940730..1942235 | + | 1506 | WP_020956680.1 | hypothetical protein | - |
| HUZ53_RS09420 (HUZ53_09415) | 1942485..1942913 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HUZ53_RS09425 (HUZ53_09420) | 1942923..1943204 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T160938 NZ_CP055005:1938869-1938971 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT160938 NZ_CP055005:c1938977-1938833 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
