Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1901024..1901169 | Replicon | chromosome |
| Accession | NZ_CP054997 | ||
| Organism | Klebsiella pneumoniae strain STIN_84 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1901060..1901162 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1901024..1901169 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ56_RS09185 (HUZ56_09165) | 1896154..1898214 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| HUZ56_RS09190 (HUZ56_09170) | 1898218..1898877 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HUZ56_RS09195 (HUZ56_09175) | 1898956..1899186 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ56_RS09200 (HUZ56_09180) | 1899299..1899673 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HUZ56_RS09205 (HUZ56_09185) | 1899677..1900546 | + | 870 | WP_023341828.1 | copper homeostasis membrane protein CopD | - |
| HUZ56_RS09210 (HUZ56_09190) | 1900563..1900901 | + | 339 | WP_064172944.1 | YebY family protein | - |
| - | 1901024..1901169 | - | 146 | - | - | Antitoxin |
| - | 1901060..1901162 | + | 103 | - | - | Toxin |
| HUZ56_RS09215 (HUZ56_09195) | 1901538..1901681 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HUZ56_RS09220 (HUZ56_09200) | 1901786..1902754 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HUZ56_RS09225 (HUZ56_09205) | 1902911..1903564 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| HUZ56_RS09230 (HUZ56_09210) | 1903561..1903752 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ56_RS09235 (HUZ56_09215) | 1903850..1904089 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ56_RS09240 (HUZ56_09220) | 1904205..1905638 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T160862 NZ_CP054997:1901060-1901162 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT160862 NZ_CP054997:c1901169-1901024 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
