Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2048767..2049038 | Replicon | chromosome |
| Accession | NZ_CP054977 | ||
| Organism | Shigella flexneri strain STIN_92 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2048897..2049000 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2048767..2049038 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ60_RS09900 | 2045322..2045984 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ60_RS09905 | 2046008..2046664 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ60_RS09910 | 2046766..2046996 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ60_RS09915 | 2047135..2047509 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUZ60_RS09920 | 2047513..2048385 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| HUZ60_RS09925 | 2048398..2048739 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2048767..2049038 | - | 272 | - | - | Antitoxin |
| - | 2048897..2049000 | + | 104 | - | - | Toxin |
| HUZ60_RS09930 | 2049135..2049791 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HUZ60_RS09935 | 2049792..2049983 | - | 192 | WP_000457842.1 | YebW family protein | - |
| HUZ60_RS09940 | 2050088..2050324 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ60_RS09945 | 2050442..2051881 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T160780 NZ_CP054977:2048897-2049000 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT160780 NZ_CP054977:c2049038-2048767 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
