Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029066..2029337 | Replicon | chromosome |
| Accession | NZ_CP054940 | ||
| Organism | Escherichia coli strain MS6192 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029104..2029207 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029066..2029337 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS6192_RS09810 | 2026223..2027662 | + | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MS6192_RS09815 | 2027780..2028016 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| MS6192_RS09820 | 2028121..2028312 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MS6192_RS09825 | 2028313..2028969 | - | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| - | 2029066..2029337 | + | 272 | - | - | Antitoxin |
| - | 2029104..2029207 | - | 104 | - | - | Toxin |
| MS6192_RS09830 | 2029365..2029706 | - | 342 | WP_000976492.1 | YebY family protein | - |
| MS6192_RS09835 | 2029719..2030591 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| MS6192_RS09840 | 2030595..2030969 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| MS6192_RS09845 | 2031108..2031338 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MS6192_RS09850 | 2031440..2032096 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| MS6192_RS09855 | 2032120..2032782 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T160659 NZ_CP054940:c2029207-2029104 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT160659 NZ_CP054940:2029066-2029337 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
