Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 291581..291713 | Replicon | chromosome |
| Accession | NZ_CP054912 | ||
| Organism | Pantoea ananatis strain FDAARGOS_680 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 291616..291713 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 291581..291713 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB88_RS04325 | 286764..288836 | + | 2073 | WP_078828729.1 | prolyl oligopeptidase family serine peptidase | - |
| FOB88_RS04330 | 288820..289491 | - | 672 | WP_015700171.1 | exodeoxyribonuclease X | - |
| FOB88_RS04335 | 289491..289721 | - | 231 | WP_019105100.1 | DNA polymerase III subunit theta | - |
| FOB88_RS04340 | 289872..290246 | + | 375 | WP_072138816.1 | copper homeostasis periplasmic binding protein CopC | - |
| FOB88_RS04345 | 290251..291126 | + | 876 | WP_176017608.1 | copper homeostasis membrane protein CopD | - |
| FOB88_RS04350 | 291154..291501 | + | 348 | WP_176017609.1 | YebY family protein | - |
| - | 291581..291713 | - | 133 | - | - | Antitoxin |
| - | 291616..291713 | + | 98 | - | - | Toxin |
| FOB88_RS04355 | 291854..292192 | - | 339 | Protein_290 | chemotaxis protein | - |
| FOB88_RS04360 | 292139..293461 | + | 1323 | Protein_291 | 6-phospho-alpha-glucosidase | - |
| FOB88_RS04365 | 293734..294207 | + | 474 | WP_176017610.1 | MEKHLA domain-containing protein | - |
| FOB88_RS04370 | 294246..295790 | - | 1545 | WP_015700182.1 | MCP four helix bundle domain-containing protein | - |
| FOB88_RS04375 | 296341..296535 | + | 195 | WP_014605687.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T160598 NZ_CP054912:291616-291713 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT160598 NZ_CP054912:c291713-291581 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
