Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 1866615..1867237 | Replicon | chromosome |
| Accession | NZ_CP054868 | ||
| Organism | Pseudomonas chlororaphis strain PCLAR04 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | A0A2N8AR08 |
| Locus tag | HUT26_RS08320 | Protein ID | WP_007929414.1 |
| Coordinates | 1866615..1866797 (+) | Length | 61 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | A0A2N8AQX2 |
| Locus tag | HUT26_RS08325 | Protein ID | WP_063429381.1 |
| Coordinates | 1866830..1867237 (+) | Length | 136 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUT26_RS08275 (HUT26_08280) | 1861783..1862382 | + | 600 | WP_210478810.1 | DUF1566 domain-containing protein | - |
| HUT26_RS08280 (HUT26_08285) | 1862431..1863153 | + | 723 | WP_210478812.1 | hypothetical protein | - |
| HUT26_RS08285 (HUT26_08290) | 1863150..1863905 | + | 756 | WP_210478814.1 | hypothetical protein | - |
| HUT26_RS08290 (HUT26_08295) | 1863902..1864105 | + | 204 | WP_210478815.1 | hypothetical protein | - |
| HUT26_RS08295 (HUT26_08300) | 1864102..1864839 | + | 738 | WP_210478817.1 | metallophosphoesterase | - |
| HUT26_RS08300 (HUT26_08305) | 1864836..1865117 | + | 282 | WP_210478819.1 | hypothetical protein | - |
| HUT26_RS08305 (HUT26_08310) | 1865114..1865281 | + | 168 | WP_210478820.1 | hypothetical protein | - |
| HUT26_RS08310 (HUT26_08315) | 1865274..1865768 | + | 495 | WP_210478822.1 | hypothetical protein | - |
| HUT26_RS08315 (HUT26_08320) | 1865807..1866034 | + | 228 | WP_210478823.1 | hypothetical protein | - |
| HUT26_RS08320 (HUT26_08325) | 1866615..1866797 | + | 183 | WP_007929414.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| HUT26_RS08325 (HUT26_08330) | 1866830..1867237 | + | 408 | WP_063429381.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| HUT26_RS08330 (HUT26_08335) | 1867483..1867950 | + | 468 | WP_063428841.1 | GAF domain-containing protein | - |
| HUT26_RS08335 (HUT26_08340) | 1868080..1868994 | + | 915 | WP_063428839.1 | SGNH/GDSL hydrolase family protein | - |
| HUT26_RS08340 (HUT26_08345) | 1869028..1870806 | - | 1779 | WP_063428837.1 | GGDEF and EAL domain-containing protein | - |
| HUT26_RS08345 (HUT26_08350) | 1871042..1871935 | - | 894 | WP_173678573.1 | LysR family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1826378..1871935 | 45557 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 6850.15 Da Isoelectric Point: 11.6709
>T160547 WP_007929414.1 NZ_CP054868:1866615-1866797 [Pseudomonas chlororaphis]
VNSRYLIGQIVADGWYLVRVRGSHHHFRHPSKPGLVTVPHPKKDLLRKTAISILKQALLM
VNSRYLIGQIVADGWYLVRVRGSHHHFRHPSKPGLVTVPHPKKDLLRKTAISILKQALLM
Download Length: 183 bp
>T160547 NZ_CP070568:c2260626-2260309 [Klebsiella pneumoniae]
ATGTTCAGATTGGTTGTGCATGTGGACGTTAAAAAGGAATTGCAGGCGCTTCCGCCCATTGTCCAGGCGAAGATGATCCG
GCAATTAGACAAGTTACGCCAAAATCCCACCGCGCTGAGAGAACCTGACAGTAAACCGCTGGGGCAGGGGCTATTTGAAA
TTCGTGCGTTAGGTTCGGTACAGGGGCGAGGGATCTACGTTTTTCAGCAAGGCAAGACGCTCTTTCTGCTACGGGTTTTT
GTCAAGAAAACGCAAAAAACCCCGTCATCGGAAATTCGCCTGGCGCTGAAGCGATTAGAGGAGATGCGCAATGAGTAA
ATGTTCAGATTGGTTGTGCATGTGGACGTTAAAAAGGAATTGCAGGCGCTTCCGCCCATTGTCCAGGCGAAGATGATCCG
GCAATTAGACAAGTTACGCCAAAATCCCACCGCGCTGAGAGAACCTGACAGTAAACCGCTGGGGCAGGGGCTATTTGAAA
TTCGTGCGTTAGGTTCGGTACAGGGGCGAGGGATCTACGTTTTTCAGCAAGGCAAGACGCTCTTTCTGCTACGGGTTTTT
GTCAAGAAAACGCAAAAAACCCCGTCATCGGAAATTCGCCTGGCGCTGAAGCGATTAGAGGAGATGCGCAATGAGTAA
Antitoxin
Download Length: 136 a.a. Molecular weight: 14604.60 Da Isoelectric Point: 4.3638
>AT160547 WP_063429381.1 NZ_CP054868:1866830-1867237 [Pseudomonas chlororaphis]
MLYPIAISMGDDEHAWGVEVPDIPGCFSAGDDLDDAMAMAREAIEGHFEILAEDGAAIPPANKVTLHAANPQYAGCTWAL
IDIDVTKYLGKAQKLNITLPGYLLNRIDEYVLHHPEAKSRSGFLASAALKVLQQD
MLYPIAISMGDDEHAWGVEVPDIPGCFSAGDDLDDAMAMAREAIEGHFEILAEDGAAIPPANKVTLHAANPQYAGCTWAL
IDIDVTKYLGKAQKLNITLPGYLLNRIDEYVLHHPEAKSRSGFLASAALKVLQQD
Download Length: 408 bp
>AT160547 NZ_CP070568:c2260316-2260029 [Klebsiella pneumoniae]
ATGAGTAAAAAGATCATTGACTGGGATACGTTAAAAACAGAACTGCTTGGCCAGCCTGAGGTTCAGGCTGCATTCGATGC
GCAAGAACGTCAACAGCGATTACGTACTATGCTGGCGCAATGGCGCGAGCAGGCGGGGCTAACCCGAGCCCAGGTGGCGC
AGAGGATGGGGGTGAGTGCGCCGACAGTCTCCAGAATGGAAGCCAATATCACCCGCGCCAGTCTGGATACCTTAACGCGA
TACGCGTTAGCCTGCGGTATAAAGCACCCGCAAGTTTTACTTTACTAA
ATGAGTAAAAAGATCATTGACTGGGATACGTTAAAAACAGAACTGCTTGGCCAGCCTGAGGTTCAGGCTGCATTCGATGC
GCAAGAACGTCAACAGCGATTACGTACTATGCTGGCGCAATGGCGCGAGCAGGCGGGGCTAACCCGAGCCCAGGTGGCGC
AGAGGATGGGGGTGAGTGCGCCGACAGTCTCCAGAATGGAAGCCAATATCACCCGCGCCAGTCTGGATACCTTAACGCGA
TACGCGTTAGCCTGCGGTATAAAGCACCCGCAAGTTTTACTTTACTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2N8AR08 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2N8AQX2 |