Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 119873..120543 Replicon plasmid pKP20194b-p1
Accession NZ_CP054769
Organism Klebsiella pneumoniae strain KP20194b

Toxin (Protein)


Gene name vagD Uniprot ID Q6U619
Locus tag HUS00_RS27520 Protein ID WP_004213072.1
Coordinates 119873..120316 (-) Length 148 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID Q6U620
Locus tag HUS00_RS27525 Protein ID WP_004213073.1
Coordinates 120313..120543 (-) Length 77 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HUS00_RS27485 115284..115559 + 276 WP_004213932.1 carboxymuconolactone decarboxylase family protein -
HUS00_RS27490 115622..116113 + 492 WP_011251327.1 DM13 domain-containing protein -
HUS00_RS27495 116162..117082 + 921 WP_004213934.1 DUF1471 domain-containing protein -
HUS00_RS27500 117173..117579 + 407 Protein_132 GAF domain-containing protein -
HUS00_RS27505 118094..118729 - 636 Protein_133 response regulator -
HUS00_RS27510 119146..119439 + 294 Protein_134 transposase -
HUS00_RS27515 119443..119859 + 417 Protein_135 restriction endonuclease -
HUS00_RS27520 119873..120316 - 444 WP_004213072.1 type II toxin-antitoxin system VapC family toxin Toxin
HUS00_RS27525 120313..120543 - 231 WP_004213073.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
HUS00_RS27530 121151..122284 + 1134 WP_004213075.1 DUF3800 domain-containing protein -
HUS00_RS27535 122300..122593 + 294 WP_004213076.1 hypothetical protein -
HUS00_RS27540 122583..122789 - 207 WP_004213077.1 hypothetical protein -
HUS00_RS27545 123141..123431 + 291 WP_004213078.1 hypothetical protein -
HUS00_RS27550 123421..124320 + 900 WP_004225022.1 nucleotide-binding protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Mobilizable plasmid - iroN / rmpA / iucA / iucB / iucC / iucD / iutA / rmpA2 1..195034 195034


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(6-129)

Antitoxin

(7-47)


Sequences


Toxin        


Download         Length: 148 a.a.        Molecular weight: 16006.74 Da        Isoelectric Point: 9.3642

>T160357 WP_004213072.1 NZ_CP054769:c120316-119873 [Klebsiella pneumoniae]
MKKTWMLDTNICSFIMREQPAAVLKRLEQAVLRGDRIVVSAVTYAEMRFGATGPKASPRHIQLVDAFCARLDAILPWDRA
AVDATTDIRVALRLAGTPIGPNDTAIAGHAIAAGAVLVTNNVREFERVPGLVLEDWVKKAALCRVIS

Download         Length: 444 bp

>T160357 NZ_CP070471:c271054-270773 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCCCTGAAAGCCGTCCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTGGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGAACCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTAAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTAA

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8677.73 Da        Isoelectric Point: 4.4563

>AT160357 WP_004213073.1 NZ_CP054769:c120543-120313 [Klebsiella pneumoniae]
MRTVSIFKNGNNRAIRLPRDLDFDGVSELEIVREGDSIILRPVRPTWGSFAQLDRAAPDFMAEREDVVSDEGRFEP

Download         Length: 231 bp

>AT160357 NZ_CP070471:c271278-271051 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCGTATCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB Q6U619


Antitoxin

Source ID Structure
AlphaFold DB Q6U620

References