Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1927883..1928154 | Replicon | chromosome |
| Accession | NZ_CP054665 | ||
| Organism | Escherichia coli strain IGC_EcoliInv_1.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1927921..1928024 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1927883..1928154 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUR94_RS09610 | 1925040..1926479 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUR94_RS09615 | 1926597..1926833 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HUR94_RS09620 | 1926938..1927129 | + | 192 | WP_000457842.1 | YebW family protein | - |
| HUR94_RS09625 | 1927130..1927786 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1927883..1928154 | + | 272 | - | - | Antitoxin |
| - | 1927921..1928024 | - | 104 | - | - | Toxin |
| HUR94_RS09630 | 1928182..1928523 | - | 342 | WP_000976476.1 | YebY family protein | - |
| HUR94_RS09635 | 1928536..1929408 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| HUR94_RS09640 | 1929412..1929786 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HUR94_RS09645 | 1929925..1930155 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUR94_RS09650 | 1930257..1930913 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUR94_RS09655 | 1930937..1931599 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T160047 NZ_CP054665:c1928024-1927921 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT160047 NZ_CP054665:1927883-1928154 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
