Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2289798..2290032 | Replicon | chromosome |
| Accession | NZ_CP054662 | ||
| Organism | Escherichia coli strain IGC_RcoliRes_1.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2289928..2290031 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2289798..2290032 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUR93_RS11190 | 2286353..2287015 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUR93_RS11195 | 2287039..2287695 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUR93_RS11200 | 2287797..2288027 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUR93_RS11205 | 2288166..2288540 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HUR93_RS11210 | 2288544..2289416 | + | 873 | WP_061892384.1 | copper homeostasis membrane protein CopD | - |
| HUR93_RS11215 | 2289429..2289770 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2289798..2290032 | - | 235 | - | - | Antitoxin |
| - | 2289928..2290031 | + | 104 | - | - | Toxin |
| HUR93_RS11220 | 2290163..2291239 | - | 1077 | WP_001189085.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HUR93_RS11225 | 2291205..2291486 | - | 282 | WP_001311878.1 | excisionase | - |
| HUR93_RS11230 | 2291593..2291781 | - | 189 | WP_024165285.1 | DUF1187 family protein | - |
| - | 2291597..2291775 | + | 179 | NuclAT_1 | - | - |
| - | 2291597..2291775 | + | 179 | NuclAT_1 | - | - |
| - | 2291597..2291775 | + | 179 | NuclAT_1 | - | - |
| - | 2291597..2291775 | + | 179 | NuclAT_1 | - | - |
| HUR93_RS11235 | 2291774..2291968 | - | 195 | WP_001307771.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| HUR93_RS11240 | 2292001..2292681 | - | 681 | WP_000186708.1 | YqaJ viral recombinase family protein | - |
| HUR93_RS11245 | 2292678..2293463 | - | 786 | WP_001484907.1 | phage recombination protein Bet | - |
| HUR93_RS11250 | 2293469..2293765 | - | 297 | WP_001484906.1 | host-nuclease inhibitor Gam family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2282388..2338189 | 55801 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T160005 NZ_CP054662:2289928-2290031 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 235 bp
>AT160005 NZ_CP054662:c2290032-2289798 [Escherichia coli]
TAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
