Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/PRK09907-MazE
Location 679439..680028 Replicon chromosome
Accession NZ_CP054619
Organism Azospirillum oryzae strain KACC 14407

Toxin (Protein)


Gene name mazF Uniprot ID -
Locus tag HUE56_RS12245 Protein ID WP_149197917.1
Coordinates 679439..679786 (-) Length 116 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID -
Locus tag HUE56_RS12250 Protein ID WP_174757220.1
Coordinates 679783..680028 (-) Length 82 a.a.

Genomic Context

HUE56_RS12220HUE56_RS12230HUE56_RS12235HUE56_RS12240HUE56_RS12255HUE56_RS12260HUE56_RS12225HUE56_RS12245HUE56_RS12250HUE56_RS12265HUE56_RS12270
Location: 675634..675954 (321 bp)
Type: Others
Protein ID: WP_109075942.1
Location: 676562..676936 (375 bp)
Type: Others
Protein ID: WP_085090219.1
Location: 676933..678006 (1074 bp)
Type: Others
Protein ID: WP_149197915.1
Location: 678055..679428 (1374 bp)
Type: Others
Protein ID: WP_149197916.1
Location: 680231..682195 (1965 bp)
Type: Others
Protein ID: WP_136704571.1
Location: 682280..682807 (528 bp)
Type: Others
Protein ID: WP_042696225.1
Location: 676011..676229 (219 bp)
Type: Others
Protein ID: WP_149197914.1
Location: 679439..679786 (348 bp)
Type: Toxin
Protein ID: WP_149197917.1
Location: 679783..680028 (246 bp)
Type: Antitoxin
Protein ID: WP_174757220.1
Location: 682880..684256 (1377 bp)
Type: Others
Protein ID: WP_149197919.1
Location: 684360..684557 (198 bp)
Type: Others
Protein ID: WP_149197920.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
HUE56_RS12220675634..675954+321WP_109075942.1hypothetical protein-
HUE56_RS12225676011..676229-219WP_149197914.1hypothetical protein-
HUE56_RS12230676562..676936+375WP_085090219.1DUF952 domain-containing protein-
HUE56_RS12235676933..678006+1074WP_149197915.1quinone-dependent dihydroorotate dehydrogenase-
HUE56_RS12240678055..679428+1374WP_149197916.1EAL domain-containing protein-
HUE56_RS12245679439..679786-348WP_149197917.1type II toxin-antitoxin system PemK/MazF family toxinToxin
HUE56_RS12250679783..680028-246WP_174757220.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
HUE56_RS12255680231..682195+1965WP_136704571.1threonine--tRNA ligase-
HUE56_RS12260682280..682807+528WP_042696225.1translation initiation factor IF-3-
HUE56_RS12265682880..684256-1377WP_149197919.1alpha/beta hydrolase-
HUE56_RS12270684360..684557-198WP_149197920.1DUF2783 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(7-115)

Antitoxin

SpoVT-AbrB domain

(7-47)


Sequences

Toxin        


Download         Length: 116 a.a.        Molecular weight: 12469.42 Da        Isoelectric Point: 9.4920

>T159980 WP_149197917.1 NZ_CP054619:c679786-679439 [Azospirillum oryzae]
MTDDKWEPEAGDLIWTDFDPRTGREQGGRRPALIVSPHAFWQATRFAIVCPITTRVRPFPSSAVLPPGPPISGEILTSHV
RSIDTMARPLLFSGARAPSAILAEVRGKLAALIGL

Download         Length: 348 bp

>T159980 NZ_CP054619:c679786-679439 [Azospirillum oryzae]
ATGACCGACGATAAATGGGAACCGGAAGCCGGCGATCTCATCTGGACTGACTTCGATCCACGGACGGGGCGTGAGCAGGG
CGGGCGCAGACCAGCACTGATCGTGTCACCCCATGCTTTTTGGCAGGCGACACGCTTTGCAATCGTATGCCCGATCACCA
CGCGCGTTCGCCCGTTTCCCAGCAGTGCCGTATTGCCGCCGGGTCCGCCGATTTCCGGCGAAATCCTGACCAGCCATGTT
CGCAGCATCGACACCATGGCCCGGCCGCTGCTGTTTTCCGGCGCACGCGCTCCATCGGCAATCCTGGCCGAAGTCCGCGG
AAAGCTCGCCGCGCTGATTGGACTTTAG

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9090.28 Da        Isoelectric Point: 4.6158

>AT159980 WP_174757220.1 NZ_CP054619:c680028-679783 [Azospirillum oryzae]
MQVQLARWGNSLGIRIPKDIASQVGLRDGTRVDIHAEGDRIVITADRPRYSLDELMKGVTPEAMREAFDWGPDVGREVVE
E

Download         Length: 246 bp

>AT159980 NZ_CP054619:c680028-679783 [Azospirillum oryzae]
ATGCAGGTCCAACTCGCACGATGGGGCAACAGCCTGGGCATCCGCATTCCCAAGGACATCGCCAGTCAGGTGGGGCTGCG
CGACGGCACAAGGGTGGACATTCACGCCGAAGGCGATCGGATCGTCATCACCGCAGATCGCCCCCGCTACAGCCTCGATG
AACTCATGAAAGGCGTCACGCCGGAGGCGATGCGGGAGGCGTTCGACTGGGGTCCCGATGTTGGCCGTGAGGTCGTTGAG
GAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References