Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2776382..2776583 | Replicon | chromosome |
| Accession | NZ_CP054411 | ||
| Organism | Enterobacter hormaechei strain KCJ3K19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2776387..2776490 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2776382..2776583 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FCG87_RS13235 (FCG87_013240) | 2772648..2774090 | + | 1443 | WP_072204417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FCG87_RS13240 (FCG87_013245) | 2774197..2774436 | + | 240 | WP_003859885.1 | YebV family protein | - |
| FCG87_RS13245 (FCG87_013250) | 2774471..2775115 | - | 645 | WP_045337547.1 | protein-serine/threonine phosphatase | - |
| FCG87_RS13250 (FCG87_013255) | 2775283..2776263 | + | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| FCG87_RS13255 (FCG87_013260) | 2776309..2776506 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2776382..2776583 | + | 202 | - | - | Antitoxin |
| - | 2776387..2776490 | - | 104 | - | - | Toxin |
| FCG87_RS13260 (FCG87_013265) | 2776632..2776970 | - | 339 | WP_048240591.1 | YebY family protein | - |
| FCG87_RS13265 (FCG87_013270) | 2776987..2777856 | - | 870 | WP_048240589.1 | copper homeostasis membrane protein CopD | - |
| FCG87_RS13270 (FCG87_013275) | 2777858..2778229 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| FCG87_RS13275 (FCG87_013280) | 2778367..2778597 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FCG87_RS13280 (FCG87_013285) | 2778709..2779359 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| FCG87_RS13285 (FCG87_013290) | 2779384..2780046 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159710 NZ_CP054411:c2776490-2776387 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT159710 NZ_CP054411:2776382-2776583 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
