Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2835241..2835444 | Replicon | chromosome |
| Accession | NZ_CP054410 | ||
| Organism | Enterobacter hormaechei strain KCJ3K13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2835248..2835351 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2835241..2835444 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FCG85_RS14045 (FCG85_014050) | 2830885..2831544 | + | 660 | WP_137042236.1 | MT-A70 family methyltransferase | - |
| FCG85_RS14050 (FCG85_014055) | 2831541..2831759 | + | 219 | WP_045338802.1 | hypothetical protein | - |
| FCG85_RS14055 (FCG85_014060) | 2831756..2831986 | + | 231 | WP_006176201.1 | hypothetical protein | - |
| FCG85_RS14060 (FCG85_014065) | 2832078..2832488 | + | 411 | WP_045324640.1 | hypothetical protein | - |
| FCG85_RS14065 (FCG85_014070) | 2832490..2832708 | + | 219 | WP_137042235.1 | TraR/DksA family transcriptional regulator | - |
| FCG85_RS14070 (FCG85_014075) | 2832799..2833068 | + | 270 | WP_048241253.1 | hypothetical protein | - |
| FCG85_RS14075 (FCG85_014080) | 2833157..2833687 | + | 531 | WP_039268951.1 | hypothetical protein | - |
| FCG85_RS14080 (FCG85_014085) | 2833844..2834116 | + | 273 | WP_023300430.1 | excisionase | - |
| FCG85_RS14085 (FCG85_014090) | 2834085..2835170 | + | 1086 | WP_045897902.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2835241..2835444 | + | 204 | - | - | Antitoxin |
| - | 2835248..2835351 | - | 104 | - | - | Toxin |
| FCG85_RS14090 (FCG85_014095) | 2835493..2835831 | - | 339 | WP_048240591.1 | YebY family protein | - |
| FCG85_RS14095 (FCG85_014100) | 2835848..2836717 | - | 870 | WP_048240589.1 | copper homeostasis membrane protein CopD | - |
| FCG85_RS14100 (FCG85_014105) | 2836719..2837090 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| FCG85_RS14105 (FCG85_014110) | 2837228..2837458 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FCG85_RS14110 (FCG85_014115) | 2837570..2838220 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| FCG85_RS14115 (FCG85_014120) | 2838245..2838907 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2769486..2841690 | 72204 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159694 NZ_CP054410:c2835351-2835248 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT159694 NZ_CP054410:2835241-2835444 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
