Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2867247..2867518 | Replicon | chromosome |
| Accession | NZ_CP054407 | ||
| Organism | Escherichia coli strain KCJ3K291 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2867285..2867388 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2867247..2867518 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR957_RS14125 | 2864404..2865843 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FR957_RS14130 | 2865961..2866197 | + | 237 | WP_001295499.1 | YebV family protein | - |
| FR957_RS14135 | 2866302..2866493 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FR957_RS14140 | 2866494..2867150 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2867247..2867518 | + | 272 | - | - | Antitoxin |
| - | 2867285..2867388 | - | 104 | - | - | Toxin |
| FR957_RS14145 | 2867546..2867887 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FR957_RS14150 | 2867900..2868772 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| FR957_RS14155 | 2868776..2869150 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FR957_RS14160 | 2869289..2869519 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FR957_RS14165 | 2869621..2870277 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FR957_RS14170 | 2870301..2870963 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159676 NZ_CP054407:c2867388-2867285 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT159676 NZ_CP054407:2867247-2867518 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
