Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1880767..1880912 | Replicon | chromosome |
| Accession | NZ_CP054406 | ||
| Organism | Klebsiella pneumoniae strain KCJ3K293 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1880803..1880905 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1880767..1880912 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOH49_RS10750 (FOH49_010770) | 1875897..1877957 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FOH49_RS10755 (FOH49_010775) | 1877961..1878620 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FOH49_RS10760 (FOH49_010780) | 1878699..1878929 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FOH49_RS10765 (FOH49_010785) | 1879042..1879416 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FOH49_RS10770 (FOH49_010790) | 1879420..1880289 | + | 870 | WP_023280292.1 | copper homeostasis membrane protein CopD | - |
| FOH49_RS10775 (FOH49_010795) | 1880306..1880644 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1880767..1880912 | - | 146 | - | - | Antitoxin |
| - | 1880803..1880905 | + | 103 | - | - | Toxin |
| FOH49_RS10780 (FOH49_010800) | 1881281..1881424 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FOH49_RS10785 (FOH49_010805) | 1881529..1882497 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FOH49_RS10790 (FOH49_010810) | 1882654..1883307 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| FOH49_RS10795 (FOH49_010815) | 1883304..1883495 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FOH49_RS10800 (FOH49_010820) | 1883593..1883832 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FOH49_RS10805 (FOH49_010825) | 1883948..1885381 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T159647 NZ_CP054406:1880803-1880905 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT159647 NZ_CP054406:c1880912-1880767 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
