Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1880768..1880913 | Replicon | chromosome |
| Accession | NZ_CP054400 | ||
| Organism | Klebsiella pneumoniae strain KCJ3K307 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1880804..1880906 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1880768..1880913 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOH51_RS10750 (FOH51_010740) | 1875898..1877958 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FOH51_RS10755 (FOH51_010745) | 1877962..1878621 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FOH51_RS10760 (FOH51_010750) | 1878700..1878930 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FOH51_RS10765 (FOH51_010755) | 1879043..1879417 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FOH51_RS10770 (FOH51_010760) | 1879421..1880290 | + | 870 | WP_023280292.1 | copper homeostasis membrane protein CopD | - |
| FOH51_RS10775 (FOH51_010765) | 1880307..1880645 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1880768..1880913 | - | 146 | - | - | Antitoxin |
| - | 1880804..1880906 | + | 103 | - | - | Toxin |
| FOH51_RS10780 (FOH51_010770) | 1881282..1881425 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FOH51_RS10785 (FOH51_010775) | 1881530..1882498 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FOH51_RS10790 (FOH51_010780) | 1882655..1883308 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| FOH51_RS10795 (FOH51_010785) | 1883305..1883496 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FOH51_RS10800 (FOH51_010790) | 1883594..1883833 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FOH51_RS10805 (FOH51_010795) | 1883949..1885382 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T159603 NZ_CP054400:1880804-1880906 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT159603 NZ_CP054400:c1880913-1880768 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
